PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_133620_xjip.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 195aa    MW: 21184.6 Da    PI: 10.3682
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_133620_xjip.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.7e-132168254
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        +++h+e+ErrRR+riN  +++Lr+llP++      K +Ka++L ++v+ +++L
  Bv6_133620_xjip.t1 21 CKSHKEAERRRRKRINAHLATLRTLLPNL-----IKTDKASVLAEVVRRVREL 68
                        789*************************9.....69***********998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.2311968IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-102168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.98E-42271No hitNo description
SuperFamilySSF474596.28E-132380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-122371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-102574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.02E-6108172No hitNo description
Gene3DG3DSA:3.30.70.2604.2E-6111165No hitNo description
CDDcd048736.34E-6113172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MLCSSSKAAR LSPEAKALAA CKSHKEAERR RRKRINAHLA TLRTLLPNLI KTDKASVLAE  60
VVRRVRELKK ATSELATDRH DECNGCNACV LPGDMDEVNL QRSEIDNTTH IATLCCEDRP  120
ELIVDLTRAL GSVKGKVVKA EMATVGGRTK SVLWVRGVGG GAPEGLLKRA LKVVVDKPSS  180
SSSGLSHGLR MHRPY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680330.11e-139PREDICTED: transcription factor bHLH30-like
TrEMBLA0A0J8C6T01e-139A0A0J8C6T0_BETVU; Uncharacterized protein
STRINGSolyc04g014360.2.14e-53(Solanum lycopersicum)
STRINGPGSC0003DMT4000606152e-53(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.13e-24bHLH family protein